A Simple Solution for Oligonucleotide Design



Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:

Total 35 Oligos

Common Data ID: AM0019 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 9880007Publication date:08/98 Type: RT-PCR
Temp: (94C 1min>60C 1min>72C 90sec)*35>72C 5min30sec
Primer Name: B7A Type of Usage: PCRTm: 77.2 C at salt 1000.0mM
Primer Name: F1 Type of Usage: PCRTm: 86.8 C at salt 1000.0mM

Common Data ID: BM0001 Virus: bovine respiratory syncytial virus strain lelystad, BRSV strain Lelystad
PMID: 9850996Publication date:10/98 Type: RT-PCR
Temp: 98C 10min>(94C 1min>55C 1min>72C 1min)*35
Primer Name: G1 Type of Usage: PCRTm: 83.7 C at salt 1000.0mM
Primer Name: F4 Type of Usage: PCRTm: 50 C
Primer Name: G4 Type of Usage: PCRTm: 48 C

Common Data ID: SH0009 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 7814551Publication date:09/94 Type: RT-Nested PCR
Temp: (94C 45sec>50C 45sec>72C 90sec)*25>72C 6min
Primer Name: B1 Type of Usage: PCRTm: 71 C at salt 1000.0mM
Primer Name: B2A Type of Usage: PCRTm: 69.1 C at salt 1000.0mM
Primer Name: B3 Type of Usage: PCRTm: 74.2 C at salt 1000.0mM
Primer Name: B4A Type of Usage: PCRTm: 71 C at salt 1000.0mM
Primer Name: Probe F Type of Usage: HybridizationTm: 79.3 C at salt 1000.0mM
Primer Name: B5A Type of Usage: PCRTm: 77.2 C at salt 1000.0mM
Primer Name: B6A Type of Usage: PCRTm: Max Tm 76.6 C Min Tm 74.7 C at salt 1000.0mM
Primer Name: B7A Type of Usage: Tm: 77.2 C at salt 1000.0mM
Primer Name: B8 Type of Usage: PCRTm: 77.2 C at salt 1000.0mM
Primer Name: Probe G Type of Usage: HybridizationTm: 86 C at salt 1000.0mM

Common Data ID: SW0081 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 10325337Publication date:06/99 Type: RT-Nested PCR
Temp: 94C 12min>(94C 60sec>58C 60sec>72C 90sec)*35>72C 10min
Primer Name: N2.1 Type of Usage: PCRTm: 71.5 C at salt 1000.0mM
Primer Name: N2.2 Type of Usage: PCRTm: 72.9 C at salt 1000.0mM
Primer Name: N2.3 Type of Usage: PCRTm: 67.9 C at salt 1000.0mM
Primer Name: N2.4 Type of Usage: PCRTm: 67.9 C at salt 1000.0mM

Common Data ID: SW0085 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 11044116Publication date:11/00 Type: RT-Nested PCR 1
Temp: 94C 12min>(94C 60sec>58C 60sec>72C 90sec)*35>72C 10min
Primer Name: N2.1 Type of Usage: PCRTm: 71.5 C at salt 1000.0mM
Primer Name: N2.2 Type of Usage: PCRTm: 72.9 C at salt 1000.0mM
Primer Name: F2.1 Type of Usage: PCRTm: 71 C at salt 1000.0mM
Primer Name: F2.2 Type of Usage: PCRTm: 70.5 C at salt 1000.0mM

Common Data ID: SW0086 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 11044116Publication date:11/00 Type: RT-nested PCR 2
Temp: 94C 12min>(94C 45sec>49C 60sec>72C 60sec)*35>72C 10min
Primer Name: N2.3 Type of Usage: PCRTm: 67.9 C at salt 1000.0mM
Primer Name: N2.4 Type of Usage: PCRTm: 67.9 C at salt 1000.0mM

Common Data ID: SW0087 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 11044116Publication date:11/00 Type: RT-Nested PCR 1
Temp: 94C 12min>(94C 60sec>55C 60sec>72C 90sec)*35>72C 10min
Primer Name: G2.5 Type of Usage: PCRTm: 70.5 C at salt 1000.0mM
Primer Name: F2.7 Type of Usage: PCRTm: 70 C at salt 1000.0mM

Common Data ID: SW0088 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 11044116Publication date:11/00 Type: RT-Nested PCR 2
Temp: 94C 12min>(94C 45sec>58C 60sec>72C 60sec)*35>72C 10min
Primer Name: VG1 Type of Usage: PCRTm: 77.2 C at salt 1000.0mM
Primer Name: VG4 Type of Usage: PCRTm: 77.2 C at salt 1000.0mM

Common Data ID: SW0089 Virus: Bovine respiratory syncytial virus, BRSV
PMID: 11044116Publication date:11/00 Type: RT-nested PCR 2
Temp: 94C 12min>(94C 45sec>62C 60sec>72C 60sec)*35>72C 10min
Primer Name: F2.3 Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: F2.4 Type of Usage: PCRTm: 71 C at salt 1000.0mM

Common Data ID: VW0024 Virus: Bovine respiratory syncytial virus A51908, BRSV, Human respiratory syncytial virus (subgroup A / strain Long), HRSV
PMID: 8373845Publication date:07/93 Type: RT-PCR
Temp: 95C 30sec>(95C 15sec>60C 15sec)*35>60C 105sec
Primer Name: VW00241 Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: VW00242 Type of Usage: PCRTm: 70 C at salt 1000.0mM
Primer Name: VW00243 Type of Usage: PCRTm: 65.8 C at salt 1000.0mM
Primer Name: VW00244 Type of Usage: PCRTm: 64.6 C at salt 1000.0mM

Total 35 Oligos
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