A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database

Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

°C± °C
Oligo length:
bp± bp


Common Data ID:

Taxonomy ID:

GI Number:

Oligonucleotide information
Reverse(CR31) primer
Oligo ID:RH00011
Oligo type: PCR Denegeracy: 2
Target: 56494-56474 Tm: Max Tm 82.2 C Min Tm 80.3 C at salt 1000.0mMLength: 21
(0 other experimental conditions)

Experimental condition used for the oligonucleotide

Common Data ID: RH0001 Publication date: 01/99
PMID: 10203465 GI: 2653291 Taxonomy ID:31518
Virus Name: Bovine herpesvirus type 1.1 (strain Jura); Bovine herpesvirus type 1.1 (strain Cooper); Bovine herpesvirus type 1.2 (strain K22); Caprine herpesvirus 1; Rangiferine herpesvirus 1; cervid herpesvirus 1; Bovine herpesvirus 5 (strain N569) Product size (PCR):
MgCl2: 2.0 mM dNTPs: 0.2 mM Type: Nested PCR 1
Temp (PCR cycle):94C 9min>(95C 1min>60C 1min>72C min)*35>72C 7min
Buffer: 50mM KCl, 10mM Tris-HCl (pH 9.0), 10% DMSO
Polymerase: 0.02U/microL AmpliTaq Gold poly (Perkin-Elmer Cetus)Cycler:

Total 1 Oligos
Copyright © 2001-2005 VirOligo Database Project. All rights reserved Feedback is welcome. Contact webmaster Ulrich Melcher at ulrich.melcher@okstate.edu.