A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database

Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

°C± °C
Oligo length:
bp± bp


Common Data ID:

Taxonomy ID:

GI Number:

Oligonucleotide information
Forward(1C608) primer
Oligo ID:pl00096
Oligo type: Denegeracy: 1
Target: 2834-2853 Tm: 74.1 C at salt 1000.0mMLength: 20
(0 other experimental conditions)
Note: Mismatch at position 2842.

Experimental condition used for the oligonucleotide

Common Data ID: BM0295 Publication date: 1998
PMID: 9652063 GI: 15216732 Taxonomy ID:12111
Virus Name: Foot-and-mouth disease virus A; Foot-and-mouth disease virus Asia 1; Foot-and-mouth disease virus C; Foot-and-mouth disease virus O; Foot-and-mouth disease virus SAT 1; Foot-and-mouth disease virus SAT 2; Foot-and-mouth disease virus SAT 3 Product size (PCR):
dNTPs: 0.1 mM Type: Universal PCR
Temp (PCR cycle):50C 15min>94C 90sec>(94C 30sec>55C 30sec>72C 42sec)*35
Buffer: 100mM Tris-HCl (pH 9.0), 50mM KCl, 0.1% Triton X-100
Polymerase: 0.033U/microL Taq DNA polyCycler: DNA Thermal Cycler
Note: Mismatch at position 2842.

Total 1 Oligos
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