A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database

Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

°C± °C
Oligo length:
bp± bp


Common Data ID:

Taxonomy ID:

GI Number:

Oligonucleotide information
Forward(V13) primer
Oligo ID:pd00510
Oligo type: Denegeracy: 1
Target: 6289-6309 Tm: 74.4 C at salt 1000.0mMLength: 21
(0 other experimental conditions)
Note: Mismatch at positions 6294 and 6303.

Experimental condition used for the oligonucleotide

Common Data ID: JX0069 Publication date: 12/97
PMID: 9607092 GI: 61063 Taxonomy ID:12118
Virus Name: Foot-and-mouth disease virus O, FMDV O; Foot-and-mouth disease virus A, FMDV A; Foot-and-mouth disease virus C, FMDV C Product size (PCR):
MgCl2: 2.5 mM dNTPs: 0.2 mM Type: RT-PCR
Temp (PCR cycle):95C 4min>(95C 1min>55C 1min>72C 1.5min)*40>72C 5min
Buffer: PCR buffer
Polymerase: 0.05U/microL Taq poly (Promega)Cycler:
Note: Mismatch at positions 6294 and 6303.

Total 1 Oligos
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