A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database

Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

°C± °C
Oligo length:
bp± bp


Common Data ID:

Taxonomy ID:

GI Number:

Oligonucleotide information
Reverse(PB00934) primer
Oligo ID:pb00934
Oligo type: Denegeracy: 2
Target: 385-363 Tm: 74.5 C at salt 1000.0mMLength: 23
(0 other experimental conditions)

Experimental condition used for the oligonucleotide

Common Data ID: BM1351 Publication date: 03/02
PMID: 11939332 GI: 9049956 Taxonomy ID:11099
Virus Name: pestivirus type 1; Bovine viral diarrhea virus genotype 2 Product size (PCR):
MgCl2: 12.5 mM dNTPs: 0.4 mM Type: RT-PCR
Temp (PCR cycle):50C 30min>95C 15min>(94C 1min>55C 1min>72C 2min)*40>72C 7min
Buffer: 1x RT-PCR buffer (One Step RT-PCR kit; Qiagen), 1x TaqMan buffer A (Applied Biosystems), 0.08U/microL RNase inhibitor, 1microL enzyme mix (Qiagen)
Polymerase: HotStart Taq poly (Qiagen)Cycler:

Total 1 Oligos
Copyright © 2001-2005 VirOligo Database Project. All rights reserved Feedback is welcome. Contact webmaster Ulrich Melcher at ulrich.melcher@okstate.edu.