A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database

Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

°C± °C
Oligo length:
bp± bp


Common Data ID:

Taxonomy ID:

GI Number:

Oligonucleotide information
Reverse(BD2) primer
Oligo ID:pb00367
Oligo type: Denegeracy: 8
Target: 1104-1085 Tm: Max Tm 74.1 C Min Tm 67.9 C at salt 1000.0mMLength: 20
(1 other experimental conditions)
Note: Specific to p20 (Npro) and a part of the C coding region.

Experimental condition used for the oligonucleotide

Common Data ID: BM0051 Publication date: 04/97
PMID: 9129644 GI: 7960755 Taxonomy ID:61010
Virus Name: Border disease virus strain Moredun cp, BDV cp; Border disease virus strain Moredun ncp, BDV ncp; Hog cholera virus (strain Brescia), CSFV; bovine viral diarrhea virus (isolate NADL), BVDV NADL Product size (PCR):
MgCl2: 2.5 mM dNTPs: 0.2 mM Type: RT-PCR
Temp (PCR cycle):(94C 1min>52C 1min>72C 1min)*35>72C 7min
Buffer: 10mM Tris-HCl (pH 8.3), 50mM KCl, 0.1mg/mL BSA
Polymerase: 0.02U/microL Taq poly (Perkin Elmer-Cetus)Cycler: Perkin Elmer-Cetus thermocycler
Note: Specific to p20 (Npro) and a part of the C coding region.

Total 1 Oligos
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