A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database

Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

°C± °C
Oligo length:
bp± bp


Common Data ID:

Taxonomy ID:

GI Number:

Oligonucleotide information
Forward(MP00891) primer
Oligo ID:MP00890
Oligo type: PCR Denegeracy: 1
Target: 188-205 Tm: 56 CLength: 18
(3 other experimental conditions)

Experimental condition used for the oligonucleotide

Common Data ID: MP0089 Publication date: 11/94
PMID: 7975238 GI: 9626649 Taxonomy ID:11100
Virus Name: bovine viral diarrhea virus (isolate NADL); bovine viral diarrhea virus strain Oregon C24V; bovine viral diarrhea virus (strain SD-1); Bovine viral diarrhea virus genotype 2, BVDV II Product size (PCR):
MgCl2: 1.5 mM dNTPs: 0.2 mM Type: RT-Nested PCR 1
Temp (PCR cycle):56C 1hr>94C 4min>(94C 10sec>50C 45sec>72C 45sec)*25>72C 10min
Buffer: 50mM KCl, 10mM Tris-HCl (pH 8.3), 0.1% Triton-X 100, 0.5U/microL MLV RTase, 2U/microL RNase inhibitor
Polymerase: 0.025U/microL Taq polyCycler:

Total 1 Oligos
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