A Simple Solution for Oligonucleotide Design


Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:



Oligonucleotide information
Forward(ILK) primer
Oligo ID:HI00031
Oligo type: PCR Denegeracy: 1024
Target: 2405-2434 Tm: Max Tm 86.4 C Min Tm 77.6 C at salt 1000.0mMLength: 28
Sequence: TCCTGGACAAGCAGCA(A/G)(A/G/C/T)(C/T)(G/C)GC(A/G/C/T)(A/C)T(A/G/C/T)AA
(0 other experimental conditions)
Note: Herpesvirus DNA Polymerase(HHV1)

Experimental condition used for the oligonucleotide

Common Data ID: HI0003 Publication date: 05/98
PMID: 9557713 GI: 59839 Taxonomy ID:69955
Virus Name: bovine lymphotropic herpesvirus, BLHV; Ovine herpesvirus 2, OHV2; Bovine herpesvirus 4, BHV4 Product size (PCR):
bp
MgCl2: 2.0 mM dNTPs: 0.2 mM Type: Nested PCR
Temp (PCR cycle):94C 3min>60C 2min>72C 1min>(94C 30sec>60C 60sec>72C 60sec)*35
Buffer: 20mM Tris HCl (pH8.4), 50mM KCl, 2.5% dimethyl sulfoxide
Polymerase: 0.05U/microL Taq poly (Gibco)Cycler: Omnigene thermal cycler (Hybaid Limited, Middlesex, UK)
Note: Herpesvirus DNA Polymerase(HHV1)

Total 1 Oligos
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