A Simple Solution for Oligonucleotide Design

Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:


Common Data ID: UM0020 Virus: SARS Coronavirus
PMID: 12690091Publication date: 8/2003 Type: Real-time PCR
Temp: 45C 15min>95C 3min>(95C 10sec>58C 30sec)*40
Primer Name: BNITMSARS1 Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: BNITMSARAs2 Type of Usage: PCRTm: 76.6 C at salt 1000.0mM
Primer Name: BNITMSARP Type of Usage:
Tm: 77 C at salt 1000.0mM

Common Data ID: UM0019 Virus: SARS Coronavirus
PMID: 12690091Publication date: 8/2003 Type: Nested PCR
Temp: 95C 3min>(95C 10sec>60C 10sec[-1C/cyc]>72C 20sec)*10>(95C 10sec>56C 10sec>72C 20sec)*20
Primer Name: BNlinS Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: BNIinAs Type of Usage: PCRTm: 72.9 C at salt 1000.0mM

Common Data ID: UM0018 Virus: SARS Coronavirus
PMID: 12690091Publication date: 8/2003 Type: Nested PCR
Temp: 95C 3min>(95C 10sec>60C 10sec[-1C/cyc]>72C 20sec)*10>(95C 10sec>56C 10sec>72C 20sec)*20
Primer Name: SAR1S Type of Usage: PCRTm: 74.4 C at salt 1000.0mM
Primer Name: SAR1As Type of Usage: PCRTm: 74.4 C at salt 1000.0mM

Common Data ID: UM0017 Virus: SARS Coronavirus
PMID: 12690091Publication date: 8/2003 Type: RT-PCR
Temp: 45C 30min>95C 3min(95C 10sec>60C 10sec[-1C/cyc]>72C 30sec)*10>(95C 10sec>56C 10sec>72C 30sec)*40
Primer Name: BNIoutS2 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM
Primer Name: BNIouutAs Type of Usage: PCRTm: 72.5 C at salt 1000.0mM

Common Data ID: UM0016 Virus: SARS Coronavirus
PMID: 12690091Publication date: 8/2003 Type: RT-PCR
Temp: 45C 30min>95C 3min(95C 10sec>60C 10sec[-1C/cyc]>72C 30sec)*10>(95C 10sec>56C 10sec>72C 30sec)*40
Primer Name: IN-6 Type of Usage: PCRTm: 77 C at salt 1000.0mM
Primer Name: IN-7 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM

Common Data ID: UM0015 Virus: SARS Coronavirus
PMID: 12690091Publication date: 8/2003 Type: RT-PCR
Temp: 45C 30min>95C 3min(95C 10sec>60C 10sec[-1C/cyc]>72C 30sec)*10>(95C 10sec>56C 10sec>72C 30sec)*40
Primer Name: IN-4 Type of Usage:
Tm: 68.5 C at salt 1000.0mM
Primer Name: IN-2 (+) Type of Usage: Tm: 77 C at salt 1000.0mM

Total 13 Oligos
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