A Simple Solution for Oligonucleotide Design



Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:

Total 65 Oligos
Common Data ID: BM0537 Virus: Bovine herpesvirus 1, BHV-1; Bovine herpesvirus 5, BHV-5
PMID: 11708680Publication date:10/01 Type: multiplex PCR
Temp: 95C 1min>(95C 1min>61.4C 1min>72C 1min)*35>72C 5min
Primer Name: TK1 Type of Usage: Tm: 74.7 C at salt 1000.0mM
Primer Name: TK2 Type of Usage: Tm: 76.1 C at salt 1000.0mM
Primer Name: GD1 Type of Usage: Tm: 78 C at salt 1000.0mM
Primer Name: GD2 Type of Usage: Tm: 73.7 C at salt 1000.0mM
Common Data ID: CW0004 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*40
Primer Name: CW00040 Type of Usage: PCRTm: 80.2 C at salt 1000.0mM
Primer Name: CW00041 Type of Usage: PCRTm: 80.4 C at salt 1000.0mM
Primer Name: CW00042 Type of Usage: HybridizationTm: 86.1 C at salt 1000.0mM
Common Data ID: CW0005 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*40
Primer Name: CW00050 Type of Usage: PCRTm: 82.3 C at salt 1000.0mM
Primer Name: CW00051 Type of Usage: PCRTm: 64 C
Primer Name: CW00052 Type of Usage: HybridizationTm: 84.4 C at salt 1000.0mM
Common Data ID: CW0006 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min> 65C 1min> 72C 2min)*40
Primer Name: CW00060 Type of Usage: PCRTm: 80.3 C at salt 1000.0mM
Primer Name: CW00061 Type of Usage: PCRTm: 80.3 C at salt 1000.0mM
Primer Name: CW00062 Type of Usage: HybridizationTm: 82.1 C at salt 1000.0mM
Common Data ID: CW0007 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*45
Primer Name: CW00070 Type of Usage: PCRTm: 82.2 C at salt 1000.0mM
Primer Name: CW00071 Type of Usage: PCRTm: 82.3 C at salt 1000.0mM
Primer Name: CW00072 Type of Usage: HybridizationTm: 84.2 C at salt 1000.0mM
Common Data ID: CW0008 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*40
Primer Name: CW00080 Type of Usage: PCRTm: 82.2 C at salt 1000.0mM
Primer Name: CW00081 Type of Usage: PCRTm: 82.2 C at salt 1000.0mM
Primer Name: CW00082 Type of Usage: HybridizationTm: 82.1 C at salt 1000.0mM
Common Data ID: CW0009 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*40
Primer Name: CW00090 Type of Usage: PCRTm: 80.2 C at salt 1000.0mM
Primer Name: CW00091 Type of Usage: PCRTm: 80.3 C at salt 1000.0mM
Primer Name: CW00092 Type of Usage:
Tm: 83.7 C at salt 1000.0mM
Common Data ID: CW0010 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*40
Primer Name: CW00100 Type of Usage: PCRTm: 80.1 C at salt 1000.0mM
Primer Name: CW00101 Type of Usage: PCRTm: 78 C at salt 1000.0mM
Primer Name: CW00102 Type of Usage:
Tm: 78.5 C at salt 1000.0mM
Common Data ID: CW0011 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min> 65C 1min>72C 2min)*40
Primer Name: CW00110 Type of Usage: PCRTm: 80.3 C at salt 1000.0mM
Primer Name: CW00111 Type of Usage: PCRTm: 80.3 C at salt 1000.0mM
Primer Name: CW00112 Type of Usage: HybridizationTm: 80.3 C at salt 1000.0mM
Common Data ID: CW0012 Virus: Bovine herpesvirus 1, BHV 1
PMID: 9261403Publication date:09/97 Type: PCR
Temp: (95C 1min>65C 1min>72C 2min)*40
Primer Name: CW00120 Type of Usage: PCRTm: 80.3 C at salt 1000.0mM
Primer Name: CW00121 Type of Usage: PCRTm: 86.1 C at salt 1000.0mM
Primer Name: CW00122 Type of Usage:
Tm: 80.6 C at salt 1000.0mM
Common Data ID: CW0017 Virus: Bovine herpesvirus 1.1, BHV 1.1
PMID: 8865582Publication date:1996 Type: PCR
Temp: 94C 30sec>(94C 15sec>67C 15sec>72C 60sec)*35>72C 5 min
Primer Name: CW00170 Type of Usage: PCRTm: 82.2 C at salt 1000.0mM
Primer Name: CW00171 Type of Usage: PCRTm: 85.7 C at salt 1000.0mM
Common Data ID: KS0003 Virus: Bovine herpesvirus type 1.1, BHV-1
PMID: 10233945Publication date:03/99 Type: RT-PCR
Temp: (95C 1min>49C 1min>72C 1min)*35
Primer Name: UL26-2 Type of Usage: PCRTm: 74.4 C at salt 1000.0mM
Primer Name:
Type of Usage:
Tm: 72.5 C at salt 1000.0mM
Primer Name: UL26-1 Type of Usage: PCRTm: 74.7 C at salt 1000.0mM
Common Data ID: KS0012 Virus: Bovine herpesvirus type 1.1, BHV-1; Bovine herpesvirus 5, BHV-5
PMID: 10598083Publication date:12/99 Type: Nested PCR 1
Temp: 94C 9min>(95C 1min>65C 1min>72C 1min)*35
Primer Name: GC1 Type of Usage: PCRTm: Max Tm 89.3 C Min Tm 83.9 C at salt 1000.0mM
Primer Name: CR1 Type of Usage: PCRTm: 85.5 C at salt 1000.0mM
Common Data ID: KS0013 Virus: Bovine herpesvirus type 1.1, BHV-1; Bovine herpesvirus 5, BHV-5
PMID: 10598083Publication date:12/99 Type: Nested PCR 2
Temp: 94C 9min>(95C 1min>67C 1min>72C 1min)*35
Primer Name: GC1 Type of Usage: PCRTm: Max Tm 89.3 C Min Tm 83.9 C at salt 1000.0mM
Primer Name: CR26 Type of Usage: PCRTm: 85.5 C at salt 1000.0mM
Common Data ID: KS0021 Virus: Bovine herpesvirus 1
PMID: 9607088Publication date:12/97 Type: PCR
Temp: (95C 1min>56C 1min>72C 1min)*35>72C 5min
Primer Name: P1 Type of Usage: PCRTm: 78.5 C at salt 1000.0mM
Primer Name: P2 Type of Usage: PCRTm: 76.4 C at salt 1000.0mM
Primer Name: P3 Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: P4 Type of Usage: PCRTm: 80.2 C at salt 1000.0mM
Primer Name: P5 Type of Usage: PCRTm: 76.1 C at salt 1000.0mM
Primer Name: P6 Type of Usage: PCRTm: 76.1 C at salt 1000.0mM
Common Data ID: SK0062 Virus: Bovine herpesvirus 1, BHV-1
PMID: 10971126Publication date:2000 Type: PCR
Temp: 97C 3min>61C 3min>72C 3min>(97C 1min>61C 1min>72C 1min)*20>(97C 30sec>61C 30sec>72C 30sec)*40
Primer Name: BTKF2 Type of Usage: Tm: 73.7 C at salt 1000.0mM
Primer Name: BTKR1 Type of Usage: Tm: 72 C at salt 1000.0mM
Common Data ID: YS0012 Virus: Bovine herpesvirus 1
PMID: 14624234Publication date:11/17/2003 Type: Hybridization
Temp:
Primer Name: 10000103 Type of Usage: Tm: 101.04C at salt 1000.0 mM
Primer Name: 10000104 Type of Usage: Tm: 101.04C at salt 1000.0 mM
Primer Name: 20001689 Type of Usage: Tm: 99.87C at salt 1000.0 mM
Primer Name: 20001690 Type of Usage: Tm: 99.87C at salt 1000.0 mM
Primer Name: 20001691 Type of Usage: Tm: 105.14C at salt 1000.0 mM
Primer Name: 20001692 Type of Usage: Tm: 106.31C at salt 1000.0 mM
Primer Name: 20001693 Type of Usage: Tm: 105.14C at salt 1000.0 mM
Primer Name: 20001694 Type of Usage: Tm: 106.31C at salt 1000.0 mM
Primer Name: 20001695 Type of Usage: Tm: 99.29C at salt 1000.0 mM
Primer Name: 20001696 Type of Usage: Tm: 99.87C at salt 1000.0 mM
Primer Name: 20001697 Type of Usage: Tm: 104.56C at salt 1000.0 mM
Primer Name: 20001698 Type of Usage: Tm: 106.9C at salt 1000.0 mM
Primer Name: 20001699 Type of Usage: Tm: 98.11C at salt 1000.0 mM
Primer Name: 20001700 Type of Usage: Tm: 98.11C at salt 1000.0 mM
Primer Name: 20001701 Type of Usage: Tm: 96.94C at salt 1000.0 mM
Primer Name: 20001702 Type of Usage: Tm: 99.29C at salt 1000.0 mM
Primer Name: 20001704 Type of Usage: Tm: 98.11C at salt 1000.0 mM
Total 65 Oligos
Copyright © 2001-2005 VirOligo Database Project. All rights reserved Feedback is welcome. Contact webmaster Yan Song at ysong@okstate.edu.