A Simple Solution for Oligonucleotide Design



Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:

Total 19 Oligos

Common Data ID: SG0031 Virus: Yellow fever virus
PMID: 12089242Publication date:07/02 Type: RT-PCR
Temp: 95C 300sec>(95C 5sec>60C 5sec[-1C/cyc]>72C 25sec)*10>(95C 5sec>56C 10sec>72C 30sec)*40
Primer Name: YFS Type of Usage: Forward PrimerTm: 73.9C at salt 1000.0 mM
Primer Name: YFV Type of Usage: Reverse PrimerTm: 74.4C at salt 1000.0 mM
Primer Name: YFP Type of Usage: PCR ProbeTm: 75C at salt 1000.0 mM

Common Data ID: SG0038 Virus: Yellow fever virus
PMID: 12376973Publication date:12/02 Type: RT-PCR
Temp: 95C 300sec>(95C 30sec>53C 90sec>72C 60sec)*30>72C 600sec
Primer Name: VD8 Type of Usage: Reverse PrimerTm: 74.1C at salt 1000.0 mM
Primer Name: EMF1 Type of Usage: Forward PrimerTm: 74.4C at salt 1000.0 mM
Primer Name: NS5YF Type of Usage: Forward PrimerTm: 70C at salt 1000.0 mM

Common Data ID: SH0021 Virus: Yellow fever virus
PMID: 9365884Publication date:11/97 Type: Semi-nested PCR
Temp: 95C 300sec>(95C 30sec>53C 90sec>72C 60sec)*30>72C 600sec
Primer Name: VD8 Type of Usage: Reverse PrimerTm: 74.1C at salt 1000.0 mM
Primer Name: EMF1 Type of Usage: Forward PrimerTm: 74.4C at salt 1000.0 mM
Primer Name: NS5YF Type of Usage: Forward PrimerTm: 70C at salt 1000.0 mM

Common Data ID: YS0012 Virus: Yellow fever virus
PMID: 14624234Publication date:11/17/2003 Type: Hybridization
Temp:
Primer Name: 10001691 Type of Usage: Tm: 89.33C at salt 1000.0 mM
Primer Name: 10001692 Type of Usage: Tm: 89.33C at salt 1000.0 mM
Primer Name: 10001693 Type of Usage: Tm: 91.67C at salt 1000.0 mM
Primer Name: 10001694 Type of Usage: Tm: 91.67C at salt 1000.0 mM
Primer Name: 10001695 Type of Usage: Tm: 95.19C at salt 1000.0 mM
Primer Name: 10001696 Type of Usage: Tm: 95.19C at salt 1000.0 mM
Primer Name: 10001697 Type of Usage: Tm: 93.43C at salt 1000.0 mM
Primer Name: 10001698 Type of Usage: Tm: 93.43C at salt 1000.0 mM
Primer Name: 10001699 Type of Usage: Tm: 94.6C at salt 1000.0 mM
Primer Name: 10001700 Type of Usage: Tm: 94.6C at salt 1000.0 mM

Total 19 Oligos
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