A Simple Solution for Oligonucleotide Design



Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:

Total 53 Oligos

Common Data ID: BM0671 Virus: Human adenovirus
PMID: 8862567Publication date:09/96 Type: Nested PCR 1
Temp: (94C 1min>50C 1min>72C 2min)*36>72C 7min
Primer Name: AdTU7 Type of Usage: Tm: 78.2 C at salt 1000.0mM
Primer Name: AdTU4' Type of Usage: Tm: 78.2 C at salt 1000.0mM

Common Data ID: BM0672 Virus: Human adenovirus
PMID: 8862567Publication date:09/96 Type: Nested PCR 2
Temp: (94C 1min>50C 1min>72C 2min)*36>72C 7min
Primer Name: AdnU-S' Type of Usage: Tm: Max Tm 76.1 C Min Tm 74.1 C at salt 1000.0mM
Primer Name: AdnU-A Type of Usage: Tm: 82.3 C at salt 1000.0mM

Common Data ID: BM0713 Virus: Human adenovirus type 40; Human adenovirus type 41
PMID: 8818963Publication date:07/96 Type: PCR
Temp: 94C 7min>(94C 1min>40C 1min>72C 1min)*30
Primer Name: H1 Type of Usage: Tm: 80.5 C at salt 1000.0mM
Primer Name: H2 Type of Usage: Tm: 80.4 C at salt 1000.0mM

Common Data ID: BM0714 Virus: Human adenovirus type 40; Human adenovirus type 41
PMID: 8818963Publication date:07/96 Type: PCR
Temp: 94C 7min>(94C 1min>55C 1min>72C 1min)*30
Primer Name: JCH1 Type of Usage: Tm: 83.9 C at salt 1000.0mM
Primer Name: JCH2 Type of Usage: Tm: 83.9 C at salt 1000.0mM

Common Data ID: BM0775 Virus: Human adenovirus type 2
PMID: 10202219Publication date:01/99 Type: Nested PCR
Temp: 94C 4min>(94C 1min>55C 1min>72C 1.5min)*35>72C 6.5min
Primer Name: PB00219 Type of Usage: Tm: 80.4 C at salt 1000.0mM
Primer Name: PB00220 Type of Usage: Tm: 80.5 C at salt 1000.0mM
Primer Name: PB00221 Type of Usage: Tm: 84.8 C at salt 1000.0mM
Primer Name: PB00222 Type of Usage: Tm: 82.1 C at salt 1000.0mM

Common Data ID: JP0003 Virus: Human Adenovirus type 2
PMID: 2585600Publication date:12/89 Type: Hybridization
Temp: 29C 12-14hr
Primer Name: Oligo 2 Type of Usage: Tm: 34 C

Common Data ID: MP0460 Virus: Mastadenovirus
PMID: 11447081Publication date:07/01 Type: RT-PCR
Temp: 95C 10min>(94C 90sec>60C 45sec>72C 180sec)*30
Primer Name: PJ00429 Type of Usage: Tm: 80.5 C at salt 1000.0mM
Primer Name: PJ00430 Type of Usage: Tm: 80.4 C at salt 1000.0mM

Common Data ID: MP0469 Virus: Human adenovirus type 1; Human adenovirus type 3; Human adenovirus type 4; Human adenovirus type 5; Human adenovirus type 7; Human adenovirus type 11; Human adenovirus type 19; Human adenovirus type 40; Human adenovirus type 41
PMID: 11158096Publication date:02/01 Type: Nested PCR 1
Temp: 94C 3min>(94C 30sec>55C 30sec>72C 60sec)*35>72C 4min
Primer Name: hex1deg Type of Usage: Tm: Max Tm 80.4 C Min Tm 77 C at salt 1000.0mM
Primer Name: hex2deg Type of Usage: Tm: Max Tm 76.4 C Min Tm 74.4 C at salt 1000.0mM

Common Data ID: MP0470 Virus: Human adenovirus type 1; Human adenovirus type 3; Human adenovirus type 4; Human adenovirus type 5; Human adenovirus type 7; Human adenovirus type 11; Human adenovirus type 19; Human adenovirus type 40; Human adenovirus type 41
PMID: 11158096Publication date:02/01 Type: Nested PCR 2
Temp: 94C 3min>(94C 30sec>55C 30sec>72C 60sec)*35>72C 4min
Primer Name: nehex3deg Type of Usage: Tm: Max Tm 82.1 C Min Tm 78.7 C at salt 1000.0mM
Primer Name: nehex4deg Type of Usage: Tm: Max Tm 86.3 C Min Tm 77.8 C at salt 1000.0mM

Common Data ID: MP0472 Virus: Human adenovirus type 11, AdV
PMID: 11303268Publication date:05/01 Type: PCR
Temp: (94C 1min>55C 2min>72C 1min)*50
Primer Name: ADRJC1 Type of Usage: Tm: 82 C at salt 1000.0mM
Primer Name: ADRJC2 Type of Usage: Tm: 85.2 C at salt 1000.0mM

Common Data ID: MP0475 Virus: Human adenovirus type 2, AdV
PMID: 9191018Publication date:05/97 Type: PCR
Temp: (94C 45sec>55C 90sec>72C 90sec)*30
Primer Name: PD00548 Type of Usage: Tm: 80.5 C at salt 1000.0mM
Primer Name: PD00549 Type of Usage: Tm: 80.4 C at salt 1000.0mM

Common Data ID: MP0499 Virus: Human adenovirus type 1; Human adenovirus type 2; Human adenovirus type 3; Human adenovirus type 4; Human adenovirus type 5; Human adenovirus type 6; Human adenovirus type 7; Human adenovirus type 8; Human adenovirus type 9; Human adenovirus type 10; Human adenovirus type 11; Human adenovirus type 12; Human adenovirus type 14; Human adenovirus type 16; Human adenovirus type 19; Human adenovirus type 21; Human adenovirus type 31; Human adenovirus type 37; Human adenovirus type 40; Human adenovirus type 41
PMID: 10834953Publication date:06/00 Type: Universal PCR
Temp: 94C 6min>(94C 1min>55C 1min>72C 1.5min)*41
Primer Name: ADRJC1 Type of Usage: Tm: 82 C at salt 1000.0mM
Primer Name: ADRJC2 Type of Usage: Tm: 85.2 C at salt 1000.0mM

Common Data ID: MP0506 Virus: Human adenovirus type 5, AdV 5
PMID: 8603861Publication date:04/96 Type: RT-PCR
Temp: (95C 90sec>68C[-1C/3cyc] 90sec>72C 90sec)*54>(95C 90sec>50C 90sec>72C 90sec)*10
Primer Name: E1a forward Type of Usage: Tm: 78.3 C at salt 1000.0mM
Primer Name: E1a reverse Type of Usage: Tm: 76.1 C at salt 1000.0mM
Primer Name: E2 forward Type of Usage: Tm: 72.5 C at salt 1000.0mM
Primer Name: E2 reverse Type of Usage: Tm: 72 C at salt 1000.0mM

Common Data ID: MP0895 Virus: Human adenovirus C, Ad
PMID: 12368303Publication date:11/02 Type: Semi-Nested PCR
Temp: 95C 4min>(95C 45sec>56C 45sec>72C 45sec)*35>72C 3min
Primer Name: MP08950 Type of Usage: PCRTm: 74.1 C at salt 1000.0mM
Primer Name: MP08951 Type of Usage: PCRTm: 71.9 C at salt 1000.0mM
Primer Name: MP08952 Type of Usage: PCRTm: Max Tm 74.4 C Min Tm 72.5 C at salt 1000.0mM

Common Data ID: SA0007 Virus: Human adenovirus C
PMID: 15364992Publication date:09/04 Type: PCR
Temp: 95C 10min>(95C 1min>55C 30sec>72C 45sec)*2>(94C 1min>60C 30sec>72C 30sec)*38>72C 7min
Primer Name: AdVvF Type of Usage: Forward PrimerTm: 69.1C at salt 1000.0 mM
Primer Name: Advcp Type of Usage: PCR ProbeTm: 79.4C at salt 1000.0 mM
Primer Name: AdVcR Type of Usage: Reverse PrimerTm: 76.1C at salt 1000.0 mM

Common Data ID: SG0096 Virus: Human adenovirus C
PMID: 15166266Publication date:2003 Type: PCR
Temp: 94C 3min>(94C 1min>47C 1min>72C 2min)*35>72C 7min
Primer Name: AdnCF Type of Usage: Forward PrimerTm: max Tm 74.1C min Tm 72C at salt 1000.0mM
Primer Name: AdnCR Type of Usage: Forward PrimerTm: 73.6C at salt 1000.0 mM

Common Data ID: YS0012 Virus: Human adenovirus C
PMID: 14624234Publication date:11/17/2003 Type: Hybridization
Temp:
Primer Name: 20001408 Type of Usage: Tm: 95.77C at salt 1000.0 mM
Primer Name: 20001409 Type of Usage: Tm: 99.87C at salt 1000.0 mM
Primer Name: 20001410 Type of Usage: Tm: 95.77C at salt 1000.0 mM
Primer Name: 20001411 Type of Usage: Tm: 92.84C at salt 1000.0 mM
Primer Name: 20001412 Type of Usage: Tm: 99.29C at salt 1000.0 mM
Primer Name: 20001413 Type of Usage: Tm: 96.94C at salt 1000.0 mM
Primer Name: 10007169 Type of Usage: Tm: 94.01C at salt 1000.0 mM
Primer Name: 10007170 Type of Usage: Tm: 94.01C at salt 1000.0 mM
Primer Name: 10007171 Type of Usage: Tm: 96.36C at salt 1000.0 mM
Primer Name: 10007172 Type of Usage: Tm: 96.36C at salt 1000.0 mM
Primer Name: 20001024 Type of Usage: Tm: 99.87C at salt 1000.0 mM
Primer Name: 20001025 Type of Usage: Tm: 95.77C at salt 1000.0 mM
Primer Name: 20001026 Type of Usage: Tm: 95.77C at salt 1000.0 mM
Primer Name: 20001027 Type of Usage: Tm: 96.94C at salt 1000.0 mM
Primer Name: 20001028 Type of Usage: Tm: 92.84C at salt 1000.0 mM
Primer Name: 20001031 Type of Usage: Tm: 99.29C at salt 1000.0 mM

Total 53 Oligos
Copyright © 2001-2005 VirOligo Database Project. All rights reserved Feedback is welcome. Contact webmaster Yan Song at ysong@okstate.edu.