A Simple Solution for Oligonucleotide Design



Click here for a list of viruses in the database


Two search options:
1. Search by virus name and/or primer data
2. Search by PMID, VirOligoID, or taxonomy ID;

Virus name:

Oligo Sequence:

Tm:
°C± °C
Oligo length:
bp± bp



PMID:

Common Data ID:

Taxonomy ID:

GI Number:

Total 70 Oligos

Common Data ID: SA0002 Virus: SARS coronavirus
PMID: 15070991Publication date:12/03 Type: Nested RT-PCR
Temp:
Primer Name: BNIoutAs Type of Usage: Reverse PrimerTm: 74.7C at salt 1000.0 mM
Primer Name: BNIoutS2 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM
Primer Name: BNlinS Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: BNIinAs Type of Usage: PCRTm: 72.9 C at salt 1000.0mM

Common Data ID: SA0003 Virus: SARS coronavirus
PMID: 15070991Publication date:12/03 Type: RT-PCR
Temp:
Primer Name: BNIoutAs Type of Usage: Reverse PrimerTm: 74.7C at salt 1000.0 mM
Primer Name: Cor-p-F2 (+) Type of Usage: PCRTm: 68.5 C at salt 1000.0mM
Primer Name: Cor-p-R1 (–) Type of Usage:
Tm: 70.5 C at salt 1000.0mM
Primer Name: BNIoutS2 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM

Common Data ID: SA0004 Virus: SARS coronavirus
PMID: 15070991Publication date:12/03 Type: Real-time RT-PCR
Temp:
Primer Name: BNIoutAs Type of Usage: Reverse PrimerTm: 74.7C at salt 1000.0 mM
Primer Name: BNIoutS2 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM

Common Data ID: SA0005 Virus: SARS coronavirus
PMID: 15070991Publication date:12/03 Type: RT-PCR
Temp:
Primer Name: SARSF Type of Usage: Forward PrimerTm: 70C at salt 1000.0 mM
Primer Name: APNR Type of Usage: Reverse PrimerTm: 71.5C at salt 1000.0 mM

Common Data ID: SA0006 Virus: SARS coronavirus
PMID: 15070991Publication date:12/03 Type: Real-time PCR
Temp:
Primer Name: SarsF APNF Type of Usage: Forward PrimerTm: 70C at salt 1000.0 mM
Primer Name: Sars APNR 6 Type of Usage: Reverse PrimerTm: 71.5C at salt 1000.0 mM
Primer Name: Probe Type of Usage: Hybridization ProbeTm: 75C at salt 1000.0 mM

Common Data ID: SG0063 Virus: SARS coronavirus
PMID: 15030702Publication date:02/02 Type: RT-PCR
Temp: 50C 1800sec>95C 900sec>(95C 30sec>50C 40sec>72C 60sec)*40
Primer Name: Cor-p-F2 (+) Type of Usage: PCRTm: 68.5 C at salt 1000.0mM
Primer Name: Cor-p-F3 (+) Type of Usage: PCRTm: 76.4 C at salt 1000.0mM
Primer Name: Cor-p-R1 (–) Type of Usage:
Tm: 70.5 C at salt 1000.0mM

Common Data ID: SG0064 Virus: SARS coronavirus
PMID: 15030702Publication date:02/02 Type: Real-time RT-PCR
Temp: 50C 600sec>95C 600sec>(95C 2sec>55C 12sec>72C 10sec)*45
Primer Name: Cor-p-F2 (+) Type of Usage: PCRTm: 68.5 C at salt 1000.0mM
Primer Name: Cor-p-F3 (+) Type of Usage: PCRTm: 76.4 C at salt 1000.0mM
Primer Name: Cor-p-R1 (–) Type of Usage:
Tm: 70.5 C at salt 1000.0mM

Common Data ID: SG0131 Virus: SARS coronavirus
PMID: 14662982Publication date:12/03 Type: RT-PCR
Temp:
Primer Name: SG013101 Type of Usage: Forward PrimerTm: 77.2C at salt 1000.0 mM
Primer Name: SG013102 Type of Usage: Reverse PrimerTm: 80.6C at salt 1000.0 mM

Common Data ID: SG0144 Virus: SARS Coronavirus
PMID: 15131175Publication date:05/05 Type: Q-RT-PCR
Temp: 95C 10sec>(95C 2sec>55C 12sec>72C10sec)*50>40C 30sec
Primer Name: BNITMSARS1 Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: BNITMSARAs2 Type of Usage: PCRTm: 76.6 C at salt 1000.0mM
Primer Name: BNITMSARP Type of Usage:
Tm: 77 C at salt 1000.0mM

Common Data ID: SG0145 Virus: SARS Coronavirus
PMID: 15131175Publication date:05/05 Type: Q-RT-PCR
Temp: 95C 30sec>(95C 5sec>55C 15sec>72C 10sec)*45>40C 30sec
Primer Name: BNIoutS2 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM
Primer Name: BNIouutAs Type of Usage: PCRTm: 72.5 C at salt 1000.0mM

Common Data ID: TA0050 Virus: SARS coronavirus
PMID: 15200815Publication date:05/04 Type: RT-PCR
Temp: 94C 5min>(94C 45sec>60C 45sec>72C 45sec)*45>72C 7min
Primer Name: COR-1 Type of Usage: Forward PrimerTm: 77.3C at salt 1000.0 mM
Primer Name: COR-2 Type of Usage: Reverse PrimerTm: 72.6C at salt 1000.0 mM

Common Data ID: TA0051 Virus: SARS coronavirus
PMID: 15200815Publication date:05/04 Type: RT-PCR
Temp: 94C 3min>(94C 0.75min>60C 0.75min>72C 0.75min)*45>72C 7min
Primer Name: COR-1 Type of Usage: Forward PrimerTm: 77.3C at salt 1000.0 mM
Primer Name: COR-2 Type of Usage: Reverse PrimerTm: 72.6C at salt 1000.0 mM

Common Data ID: TA0055 Virus: SARS coronavirus
PMID: 15349945Publication date:09/04 Type: Multiplex RT-PCR
Temp: 94C 5min>(94C 0.5min>55C 0.5min>72C 0.5min)*30>72C 7min
Primer Name: TA005501 Type of Usage: Forward PrimerTm: 72C at salt 1000.0 mM
Primer Name: TA005502 Type of Usage: Forward PrimerTm: 72C at salt 1000.0 mM
Primer Name: TA005503 Type of Usage: Reverse PrimerTm: 70C at salt 1000.0 mM
Primer Name: TA005504 Type of Usage: Reverse PrimerTm: 70C at salt 1000.0 mM

Common Data ID: TA0056 Virus: SARS coronavirus
PMID: 15349945Publication date:09/04 Type: Multiplex RT-PCR
Temp: 94C 5min>(94C 30sec>55C 30sec>72C 30sec)*30>72C 7min
Primer Name: TA005601 Type of Usage: Forward PrimerTm: 72C at salt 1000.0 mM
Primer Name: TA005602 Type of Usage: Forward PrimerTm: 72C at salt 1000.0 mM
Primer Name: TA005603 Type of Usage: Reverse PrimerTm: 70C at salt 1000.0 mM
Primer Name: TA005604 Type of Usage: Reverse PrimerTm: 70C at salt 1000.0 mM

Common Data ID: TA0059 Virus: SARS coronavirus
PMID: 15131154Publication date:5/04 Type: RT-PCR
Temp: 94C 2min>(94C 30sec>54C 30sec>72C 30sec)*34>72C 10min
Primer Name: BNIout-sense Type of Usage: Forward PrimerTm: 70.2C at salt 1000.0 mM
Primer Name: BNIout-antisense Type of Usage: Reverse PrimerTm: 74.7C at salt 1000.0 mM

Common Data ID: TA0061 Virus: SARS coronavirus
PMID: 14633916Publication date:11/03 Type: Real-time RT-PCR
Temp: 95C 5min>(94C 20sec>56C 1min)*40
Primer Name: SARSPol1 forward Type of Usage: Forward PrimerTm: 73.2C at salt 1000.0 mM
Primer Name: SARSPol1 reverse Type of Usage: Reverse PrimerTm: 71C at salt 1000.0 mM
Primer Name: SARSPol1 probe Type of Usage: PCR ProbeTm: 78.7C at salt 1000.0 mM
Primer Name: SARSN forward Type of Usage: Forward PrimerTm: 52C
Primer Name: SARSN reverse Type of Usage: Reverse PrimerTm: 72.5C at salt 1000.0 mM
Primer Name: SARSN probe Type of Usage: PCR ProbeTm: 75.3C at salt 1000.0 mM

Common Data ID: TA0062 Virus: SARS coronavirus
PMID: 15178653Publication date:8/04 Type: Real-time RT-PCR
Temp:
Primer Name: SARSPol1 forward Type of Usage: Forward PrimerTm: 73.2C at salt 1000.0 mM
Primer Name: SARSPol1 reverse Type of Usage: Reverse PrimerTm: 71C at salt 1000.0 mM
Primer Name: SARSPol1 probe Type of Usage: PCR ProbeTm: 78.7C at salt 1000.0 mM
Primer Name: SARSN forward Type of Usage: Forward PrimerTm: 52C
Primer Name: SARSN reverse Type of Usage: Reverse PrimerTm: 72.5C at salt 1000.0 mM
Primer Name: SARSN probe Type of Usage: PCR ProbeTm: 75.3C at salt 1000.0 mM

Common Data ID: UM0012 Virus: SARS coronavirus
PMID: 12690092Publication date:04/03 Type: RT-PCR
Temp: N/A
Primer Name: Cor-p-F2 (+) Type of Usage: PCRTm: 68.5 C at salt 1000.0mM
Primer Name: Cor-p-F3 (+) Type of Usage: PCRTm: 76.4 C at salt 1000.0mM
Primer Name: Cor-p-R1 (–) Type of Usage:
Tm: 70.5 C at salt 1000.0mM

Common Data ID: UM0014 Virus: SARS coronavirus
PMID: 12711465Publication date:04/03 Type: RT-PCR
Temp: 94C 8 min>(94C 1min>50C1min>72C 1min)*40
Primer Name: SARSF18 Type of Usage: PCRTm: 52 C
Primer Name: SARSR18 Type of Usage: PCRTm: 48 C

Common Data ID: UM0015 Virus: SARS Coronavirus
PMID: 12690091Publication date:8/2003 Type: RT-PCR
Temp: 45C 30min>95C 3min(95C 10sec>60C 10sec[-1C/cyc]>72C 30sec)*10>(95C 10sec>56C 10sec>72C 30sec)*40
Primer Name: IN-2 (+) Type of Usage: Tm: 77 C at salt 1000.0mM
Primer Name: IN-4 Type of Usage:
Tm: 68.5 C at salt 1000.0mM

Common Data ID: UM0017 Virus: SARS Coronavirus
PMID: 12690091Publication date:8/2003 Type: RT-PCR
Temp: 45C 30min>95C 3min(95C 10sec>60C 10sec[-1C/cyc]>72C 30sec)*10>(95C 10sec>56C 10sec>72C 30sec)*40
Primer Name: BNIoutS2 Type of Usage: PCRTm: 70.2 C at salt 1000.0mM
Primer Name: BNIouutAs Type of Usage: PCRTm: 72.5 C at salt 1000.0mM

Common Data ID: UM0018 Virus: SARS Coronavirus
PMID: 12690091Publication date:8/2003 Type: Nested PCR
Temp: 95C 3min>(95C 10sec>60C 10sec[-1C/cyc]>72C 20sec)*10>(95C 10sec>56C 10sec>72C 20sec)*20
Primer Name: SAR1S Type of Usage: PCRTm: 74.4 C at salt 1000.0mM
Primer Name: SAR1As Type of Usage: PCRTm: 74.4 C at salt 1000.0mM

Common Data ID: UM0019 Virus: SARS Coronavirus
PMID: 12690091Publication date:8/2003 Type: Nested PCR
Temp: 95C 3min>(95C 10sec>60C 10sec[-1C/cyc]>72C 20sec)*10>(95C 10sec>56C 10sec>72C 20sec)*20
Primer Name: BNlinS Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: BNIinAs Type of Usage: PCRTm: 72.9 C at salt 1000.0mM

Common Data ID: UM0020 Virus: SARS Coronavirus
PMID: 12690091Publication date:8/2003 Type: Real-time PCR
Temp: 45C 15min>95C 3min>(95C 10sec>58C 30sec)*40
Primer Name: BNITMSARS1 Type of Usage: PCRTm: 72 C at salt 1000.0mM
Primer Name: BNITMSARAs2 Type of Usage: PCRTm: 76.6 C at salt 1000.0mM
Primer Name: BNITMSARP Type of Usage:
Tm: 77 C at salt 1000.0mM

Total 70 Oligos
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